PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco003674.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family WRKY
Protein Properties Length: 204aa    MW: 22819.8 Da    PI: 9.2487
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco003674.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY82.73.6e-26101155159
                  ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                  ldDgy+WrKYGqK vk+++fpr    Ct++gC+vkk+v+r ++d+ +v++tYeg H+h+
  Aco003674.1 101 LDDGYRWRKYGQKAVKNNKFPR----CTHQGCNVKKQVQRLSKDEGIVVTTYEGMHTHP 155
                  59*******************6....********************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.0E-2886155IPR003657WRKY domain
SuperFamilySSF1182904.84E-2493156IPR003657WRKY domain
PROSITE profilePS5081124.15796157IPR003657WRKY domain
SMARTSM007748.2E-33101156IPR003657WRKY domain
PfamPF031064.0E-20102155IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MENYSMLFPP QPPSYSYLTS HFPHQHIPAN NMVHDTRVLG SAGVLQGESN VGAAAEARDQ  60
ASKAARMEEG GAESEAKRRK GEKKVRKPRY AFQTRSQVDI LDDGYRWRKY GQKAVKNNKF  120
PRCTHQGCNV KKQVQRLSKD EGIVVTTYEG MHTHPIEKAR HVTIVVLYGS CKILAAELQP  180
PEPYLVCYGA EEEKGRYELD GVG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-2291156776Probable WRKY transcription factor 4
2lex_A4e-2291156776Probable WRKY transcription factor 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010917544.15e-59PREDICTED: probable WRKY transcription factor 75 isoform X1
TrEMBLK3ZJV43e-52K3ZJV4_SETIT; Uncharacterized protein
STRINGSi026859m8e-52(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP110038133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13080.16e-41WRKY DNA-binding protein 75